Calculate the fluorescence humification index (HIX)
Source:R/eem_metrics.R
eem_humification_index.Rd
The fluorescence humification index (HIX), which compares two broad aromatic dominated fluorescence maxima, is calculated at 254 nm excitation by dividing the sum of fluorescence intensities between emission 435 to 480 nm by the the sum of fluorescence intensities between 300 to 345 nm.
Value
An object of class eemlist
.
A data frame containing the humification index (HIX) for each eem.
Interpolation
Different excitation and emission wavelengths are often used to measure
EEMs. Hence, it is possible to have mismatchs between measured wavelengths
and wavelengths used to calculate specific metrics. In these
circumstances, EEMs are interpolated using the
interp2
function from the parcma
library. A
message warning the user will be prompted if data interpolation is
performed.
References
Ohno, T. (2002). Fluorescence Inner-Filtering Correction for Determining the Humification Index of Dissolved Organic Matter. Environmental Science & Technology, 36(4), 742-746.
Examples
file <- system.file("extdata/cary/scans_day_1/", package = "eemR")
eem <- eem_read(file, import_function = "cary")
eem_humification_index(eem)
#> Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
#> Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
#> Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
#> Warning: This metric uses either excitation or emission wavelengths that were not present in the data. Data has been interpolated to fit the requested wavelengths.
#> sample hix
#> 1 nano 0.5568136
#> 2 sample1 6.3795618
#> 3 sample2 4.2548483
#> 4 sample3 13.0246234