The biological fluorescence index (BIX) is calculated by dividing the fluorescence at excitation 310 nm and emission at 380 nm (ex = 310, em = 380) by that at excitation 310 nm and emission at 430 nm (ex = 310, em = 430).
Interpolation
Different excitation and emission wavelengths are often used to measure
EEMs. Hence, it is possible to have mismatchs between measured wavelengths
and wavelengths used to calculate specific metrics. In these
circumstances, EEMs are interpolated using the
interp2
function from the parcma
library. A
message warning the user will be prompted if data interpolation is
performed.
References
Huguet, A., Vacher, L., Relexans, S., Saubusse, S., Froidefond, J. M., & Parlanti, E. (2009). Properties of fluorescent dissolved organic matter in the Gironde Estuary. Organic Geochemistry, 40(6), 706-719.
Examples
file <- system.file("extdata/cary/scans_day_1/", package = "eemR")
eem <- eem_read(file, import_function = "cary")
eem_biological_index(eem)
#> sample bix
#> 1 nano 2.6812045
#> 2 sample1 0.7062640
#> 3 sample2 0.8535423
#> 4 sample3 0.4867927